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  About GWIPS-viz

GWIPS-viz aims to provide on-line tools for the analysis and visualization of ribo-seq data obtained with the ribosome profiling technique, see Ingolia et al (2009) Science.

GWIPS-viz is based on the UCSC Genome Browser, developed by the Genome Informatics Group, Center for Biomolecular Science and Engineering, University of California, Santa Cruz.


Oct 2016
RUST profiles to check the quality of RiboSeq datasets are now available for many studies in GWIPS-viz. Just click on the individual study link in the Ribosome Profiles - Elongating Ribosomes (A-site) track group and then click on the View RUST plots button at the top left-hand side of the page. See O'Connor et al. (2016) for full details on RUST.

May 2016
The GWIPS-viz browser now supports strand orientation for bacterial studies.
Additionally we have applied a 3' prime offset to determine the A-site as mentioned in Woolstenhulme et al. 2015.

June 2015
The GWIPS-viz hg38 global ribosome profiling track is now available on the UCSC Genome Browser. Select Full view to see the GWIPS-viz Riboseq track which is available under the Expression group.

  Conditions of Use
GWIPS-viz is based on the UCSC Genome Browser source code. Please see if you wish to download and modify the GWIPS-viz source code. If you wish to acknowledge GWIPS-viz in your publications, please cite Michel et al (2014) Nucleic Acids Res.

GWIPS-viz is supported by Science Foundation Ireland.SFI