Post Reply 
 
Thread Rating:
  • 0 Votes - 0 Average
  • 1
  • 2
  • 3
  • 4
  • 5
Ribo-seq coverage data
08-Dec-2016, 12:00 PM
Post: #1
Ribo-seq coverage data
Hello,

Is there a way to download the Ribo-seq coverage data from specific sequences? For example, when I search for S. cerevisiae's "chrIX:73,787-76,171", I am redirected to a page with different graphs, but what I am really looking for is the raw data that is used to make these graphs. Is there a way for me to access/download them?

Thank you.
Find all posts by this user
Quote this message in a reply
08-Dec-2016, 01:52 PM (This post was last modified: 10-Dec-2016 11:05 AM by jamespa.)
Post: #2
RE: Ribo-seq coverage data
Hi

There are two ways you can access the count data which are displayed in the ribosome profile graphs.

The Downloads tab http://gwips.ucc.ie/downloads/index.html provides the count data in bigWig format.

The Tables tab provides counts for coordinate positions in bedGraph format http://gwips.ucc.ie/cgi-bin/hgTables

Kind Regards,
Audrey
Find all posts by this user
Quote this message in a reply
Post Reply 


Forum Jump:


User(s) browsing this thread: 1 Guest(s)

GWIPS-viz | Return to Top | Return to Content | Light (Archive) Mode | RSS Syndication