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Brar 2012 data - table-specific information
25-Jul-2015, 06:24 PM (This post was last modified: 30-Aug-2015 10:03 AM by Renana.)
Post: #1
Brar 2012 data - table-specific information
Hi!

Is there an option to view all the footprints used to create each *specific table* in the ribosome profiling of Brar 2012 track?

By clicking on the "describe table schema" I can see a description with all the GEO accessions of the footprints used to generate the whole track, but where/how can I see only the specific GEO accessions of the footprints used to generate the "gb15" table for example?

Thanks!
Renana
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27-Jul-2015, 09:39 AM
Post: #2
RE: Brar 2012 data - table-specific information
Hi Renana,

You are correct that when you click on the "describe table schema" link in the Tables Browser, all of the GEO accessions are provided. We do not provide the GEO accessions for the individual tracks separately. We will try to improve this.

In the meantime, the specific GEO accessions for the "gb15" track are:
GSM843780 footprints for gb15 meiotic replicate 1
GSM843781 footprints for gb15 meiotic replicate 2
GSM843748 footprints for exponential vegetative cells of the strain gb15

Thanks for bringing this to our attention,
The GWIPS-viz team
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