Post Reply 
 
Thread Rating:
  • 0 Votes - 0 Average
  • 1
  • 2
  • 3
  • 4
  • 5
Triplet Periodicity
02-Nov-2015, 09:25 AM
Post: #11
RE: Triplet Periodicity
Hi Yingpu,

You can generate metagene plots with the Metagene Analysis tool in the riboSeqR suite of tools (Step 3). After aligning to your transcriptome, you will need to run steps 1 step 2 in riboSeqR before step 3 can be run.

Regards,
Audrey
Find all posts by this user
Quote this message in a reply
03-Nov-2015, 03:55 PM
Post: #12
RE: Triplet Periodicity
Hey Audrey,

Yes, it worked, you guys are awesome!

Yingpu
Find all posts by this user
Quote this message in a reply
22-Aug-2017, 09:06 AM
Post: #13
RE: Triplet Periodicity
Hi there

I am having the same issue where my plots for periodicity show values of zero.
I have checked the fasta of Human 19, that I downloaded from UCSC table through ribogalaxy and there dont seem to be any additional spaces, as described in this thread.
I can shall my history if that helps?

Thanks Julie
Find all posts by this user
Quote this message in a reply
Post Reply 


Forum Jump:


User(s) browsing this thread: 1 Guest(s)

GWIPS-viz | Return to Top | Return to Content | Light (Archive) Mode | RSS Syndication