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Reference Request
10-Sep-2015, 07:42 PM (This post was last modified: 10-Sep-2015 08:20 PM by gagliajm.)
Post: #1
Reference Request
Hi

I was wondering if it were possible to have the Adenovirus 5 reference genome included in Ribogalaxy (http://www.ncbi.nlm.nih.gov/nuccore/AC_000008.1).

Thank you very much for the tools.

Jason
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11-Sep-2015, 07:19 AM
Post: #2
RE: Reference Request
Hi Jason,

We assume that your request regards the addition of bowtie indexes for the Adenovirus 5 reference genome in RiboGalaxy? We currently only provide bowtie indexes of genomes that are hosted on GWIPS-viz (http://gwips.ucc.ie) so that data from these genomes can be uploaded and visualised in GWIPS-viz.

If the genome is not yet in GWIPS-viz (as is the case with Adenovirus 5, the easiest is to upload the fasta file of your genome to your RiboGalaxy history and then select for bowtie indexes to be generated from your history.

Hope this helps,
The RiboGalaxy team
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