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Metadata for ribosome profiling data? - gwright - 05-Aug-2019 07:17 PM

Currently there are 26 S. cerevisiae ribosome profiling data sets available for download. Is there a resource providing relevant metadata (i.e., a summary of the individual protocols used within each study/a link to the original GEO entries for each data set) for each, other than doing a google scholar search for the original papers based on the author last name and the year published?
Thanks!


RE: Metadata for ribosome profiling data? - audrey - 19-Aug-2019 09:48 AM

Hi,

We don't provide details of the individual protocols. However the accession numbers of the original GEO entries from where the data sets were downloaded are available on https://gwips.ucc.ie/uploads/global_aggregate_logs/global_aggregate_log.txt. This link is provided in the Description section of for each Global track for each organism. In addition, for each individual study, we provide a link to the publication.

Hope this helps,
Audrey