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why RUM and not Tophat?
09-Jan-2014, 10:43 AM
Post: #1
why RUM and not Tophat?
Hi,

I was wondering why you have used RUM and not Tophat for your alignments. By the way have you tried Fanse?

Nucleic Acids Res. 2012 Jun;40(11):e83. doi: 10.1093/nar/gks196. Epub 2012 Feb 29.
FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads.
Zhang G, Fedyunin I, Kirchner S, Xiao C, Valleriani A, Ignatova Z.

Antón
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why RUM and not Tophat? - anton.vila - 09-Jan-2014 10:43 AM
RE: why RUM and not Tophat? - audrey - 09-Jan-2014, 01:52 PM

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