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gff files in kmer analysis.
07-Nov-2017, 12:52 PM
Post: #4
RE: gff files in kmer analysis.
Hi James,

So I reran the kmer analysis with Ensemble gff3 and a sorted bam file generated by STAR.
The gff3 and genome are for ensembl 86.

kmer gave the following error:
Error during footprinting : list index out of range

I read a thread showing the similar problem and the solution is to use the
genome from NCBI. However, ensembl is used in other part of the project and I would to
stick to the same one. Do you have an idea why it does not work for ensembl?
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Messages In This Thread
gff files in kmer analysis. - shao - 06-Nov-2017, 10:04 AM
RE: gff files in kmer analysis. - jamesp - 06-Nov-2017, 12:50 PM
RE: gff files in kmer analysis. - shao - 06-Nov-2017, 04:05 PM
RE: gff files in kmer analysis. - shao - 07-Nov-2017 12:52 PM

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