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Initiating ribosomes global aggregate data
17-May-2019, 03:07 PM
Post: #3
RE: Initiating ribosomes global aggregate data
Thank you for the quick response!

Based on the file name (Global_RiboProInit.19_02_2018.bw), I think it includes data from Feb 2018.

Example case where the bigWig I have differs from the browser:
Code:
## convert bigWig to bedGraph
$ ./UCSCTools/bigWigToWig Global_RiboProInit.19_02_2018.bw Global_RiboProInit.19_02_2018.bedgraph

## find a specific region in chromosome 3
$ grep '^chr3' Global_RiboProInit.19_02_2018.bedgraph | awk 'BEGIN{FS="\t";OFS="\t"}($2>51975265 && $3<51975275)'
chr3    51975269        51975270        3
chr3    51975270        51975271        432
chr3    51975271        51975272        25

The exact same region seen in the browser: http://bit.ly/2Qb8LXA
Note the 'Initiating ribosome profiles from all studies' track tops at 36 reads instead of the expect 432 (based on what's in the Global_RiboProInit.19_02_2018.bw file)
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RE: Initiating ribosomes global aggregate data - kodalivk - 17-May-2019 03:07 PM

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