HEK293: Gao14 Track Settings
 
Quantitative profiling of initiating ribosomes in vivo (Xiangwei et al. 2014)   (All Elongating Ribosomes (Footprints) tracks)

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     SRR1630828  Ribosome coverage data from elongating ribosomes (SRR1630828) (Xiangwei et al. 2014)   Schema 
     SRR1630829  Ribosome coverage data from elongating ribosomes (SRR1630829) (Xiangwei et al. 2014)   Schema 
     SRR1630830  Ribosome coverage data from elongating ribosomes (SRR1630830) (Xiangwei et al. 2014)   Schema 
     SRR1630831  Ribosome coverage data from elongating ribosomes (SRR1630831) (Xiangwei et al. 2014)   Schema 
     SRR1630832  Ribosome coverage data from elongating ribosomes (SRR1630832) (Xiangwei et al. 2014)   Schema 
     SRR1630833  Ribosome coverage data from elongating ribosomes (SRR1630833) (Xiangwei et al. 2014)   Schema 
    

Methods

Data from the following samples were processed:
SRR1630828 Ribosome coverage data from elongating ribosomes Homo sapiens(Xiangwei, et al. 2014)
SRR1630829 Ribosome coverage data from elongating ribosomes Homo sapiens(Xiangwei, et al. 2014)
SRR1630831 Ribosome coverage data from elongating ribosomes Homo sapiens(Xiangwei, et al. 2014)
SRR1630832 Ribosome coverage data from elongating ribosomes Homo sapiens(Xiangwei, et al. 2014)
SRR1630833 Ribosome coverage data from elongating ribosomes Homo sapiens(Xiangwei, et al. 2014)
SRR1630830 Ribosome coverage data from elongating ribosomes Homo sapiens(Xiangwei, et al. 2014)

Adapter sequence n was removed from reads using Cutadapt An alignment to ribosomal RNA was performed using Bowtie, and aligning reads were discarded. An alignment to the hg38 genome assembly was performed using Bowtie, and reads below 25 nt were discarded. These tracks contain the uniquely mapping reads.,

References

Xiangwei Gao, Ji Wan, Botao Liu, Ming Ma, Ben Shen and Shu-Bing Qian (2014) Quantitative profiling of initiating ribosomes in vivo.doi: 10.1038/nmeth.3208