LCL: Battle 2015 Track Settings
 
Impact of Regulatory Variation from RNA to Protein (Battle et al. 2015)   (All Elongating Ribosomes (Footprints) tracks)

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     GM18486  Riboseq coverage of lymphoblastoid cell line: GM18486 (Battle et al. 2015)   Schema 
     GM18498  Riboseq coverage of lymphoblastoid cell line: GM18498 (Battle et al. 2015)   Schema 
     GM18499  Riboseq coverage of lymphoblastoid cell line: GM18499 (Battle et al. 2015)   Schema 
     GM18501  Riboseq coverage of lymphoblastoid cell line: GM18501 (Battle et al. 2015)   Schema 
     GM18502  Riboseq coverage of lymphoblastoid cell line: GM18502 (Battle et al. 2015)   Schema 
     GM18504  Riboseq coverage of lymphoblastoid cell line: GM18504 (Battle et al. 2015)   Schema 
     GM18505  Riboseq coverage of lymphoblastoid cell line: GM18505 (Battle et al. 2015)   Schema 
     GM18507  Riboseq coverage of lymphoblastoid cell line: GM18507 (Battle et al. 2015)   Schema 
     GM18508  Riboseq coverage of lymphoblastoid cell line: GM18508 (Battle et al. 2015)   Schema 
     GM18510  Riboseq coverage of lymphoblastoid cell line: GM18510 (Battle et al. 2015)   Schema 
     GM18511  Riboseq coverage of lymphoblastoid cell line: GM18511 (Battle et al. 2015)   Schema 
     GM18516  Riboseq coverage of lymphoblastoid cell line: GM18516 (Battle et al. 2015)   Schema 
     GM18517  Riboseq coverage of lymphoblastoid cell line: GM18517 (Battle et al. 2015)   Schema 
     GM18519  Riboseq coverage of lymphoblastoid cell line: GM18519 (Battle et al. 2015)   Schema 
     GM18520  Riboseq coverage of lymphoblastoid cell line: GM18520 (Battle et al. 2015)   Schema 
     GM18522  Riboseq coverage of lymphoblastoid cell line: GM18522 (Battle et al. 2015)   Schema 
     GM18523  Riboseq coverage of lymphoblastoid cell line: GM18523 (Battle et al. 2015)   Schema 
     GM18852  Riboseq coverage of lymphoblastoid cell line: GM18852 (Battle et al. 2015)   Schema 
     GM18853  Riboseq coverage of lymphoblastoid cell line: GM18853 (Battle et al. 2015)   Schema 
     GM18855  Riboseq coverage of lymphoblastoid cell line: GM18855 (Battle et al. 2015)   Schema 
     GM18856  Riboseq coverage of lymphoblastoid cell line: GM18856 (Battle et al. 2015)   Schema 
     GM18858  Riboseq coverage of lymphoblastoid cell line: GM18858 (Battle et al. 2015)   Schema 
     GM18861  Riboseq coverage of lymphoblastoid cell line: GM18861 (Battle et al. 2015)   Schema 
     GM18862  Riboseq coverage of lymphoblastoid cell line: GM18862 (Battle et al. 2015)   Schema 
     GM18870  Riboseq coverage of lymphoblastoid cell line: GM18870 (Battle et al. 2015)   Schema 
     GM18907  Riboseq coverage of lymphoblastoid cell line: GM18907 (Battle et al. 2015)   Schema 
     GM18909  Riboseq coverage of lymphoblastoid cell line: GM18909 (Battle et al. 2015)   Schema 
     GM18912  Riboseq coverage of lymphoblastoid cell line: GM18912 (Battle et al. 2015)   Schema 
     GM18913  Riboseq coverage of lymphoblastoid cell line: GM18913 (Battle et al. 2015)   Schema 
     GM18916  Riboseq coverage of lymphoblastoid cell line: GM18916 (Battle et al. 2015)   Schema 
     GM19092  Riboseq coverage of lymphoblastoid cell line: GM19092 (Battle et al. 2015)   Schema 
     GM19093  Riboseq coverage of lymphoblastoid cell line: GM19093 (Battle et al. 2015)   Schema 
     GM19098  Riboseq coverage of lymphoblastoid cell line: GM19098 (Battle et al. 2015)   Schema 
     GM19099  Riboseq coverage of lymphoblastoid cell line: GM19099 (Battle et al. 2015)   Schema 
     GM19101  Riboseq coverage of lymphoblastoid cell line: GM19101 (Battle et al. 2015)   Schema 
     GM19102  Riboseq coverage of lymphoblastoid cell line: GM19102 (Battle et al. 2015)   Schema 
     GM19108  Riboseq coverage of lymphoblastoid cell line: GM19108 (Battle et al. 2015)   Schema 
     GM19114  Riboseq coverage of lymphoblastoid cell line: GM19114 (Battle et al. 2015)   Schema 
     GM19116  Riboseq coverage of lymphoblastoid cell line: GM19116 (Battle et al. 2015)   Schema 
     GM19119  Riboseq coverage of lymphoblastoid cell line: GM19119 (Battle et al. 2015)   Schema 
     GM19127  Riboseq coverage of lymphoblastoid cell line: GM19127 (Battle et al. 2015)   Schema 
     GM19128  Riboseq coverage of lymphoblastoid cell line: GM19128 (Battle et al. 2015)   Schema 
     GM19130  Riboseq coverage of lymphoblastoid cell line: GM19130 (Battle et al. 2015)   Schema 
     GM19131  Riboseq coverage of lymphoblastoid cell line: GM19131 (Battle et al. 2015)   Schema 
     GM19137  Riboseq coverage of lymphoblastoid cell line: GM19137 (Battle et al. 2015)   Schema 
     GM19138  Riboseq coverage of lymphoblastoid cell line: GM19138 (Battle et al. 2015)   Schema 
     GM19140  Riboseq coverage of lymphoblastoid cell line: GM19140 (Battle et al. 2015)   Schema 
     GM19141  Riboseq coverage of lymphoblastoid cell line: GM19141 (Battle et al. 2015)   Schema 
     GM19143  Riboseq coverage of lymphoblastoid cell line: GM19143 (Battle et al. 2015)   Schema 
     GM19144  Riboseq coverage of lymphoblastoid cell line: GM19144 (Battle et al. 2015)   Schema 
     GM19147  Riboseq coverage of lymphoblastoid cell line: GM19147 (Battle et al. 2015)   Schema 
     GM19152  Riboseq coverage of lymphoblastoid cell line: GM19152 (Battle et al. 2015)   Schema 
     GM19153  Riboseq coverage of lymphoblastoid cell line: GM19153 (Battle et al. 2015)   Schema 
     GM19159  Riboseq coverage of lymphoblastoid cell line: GM19159 (Battle et al. 2015)   Schema 
     GM19160  Riboseq coverage of lymphoblastoid cell line: GM19160 (Battle et al. 2015)   Schema 
     GM19171  Riboseq coverage of lymphoblastoid cell line: GM19171 (Battle et al. 2015)   Schema 
     GM19172  Riboseq coverage of lymphoblastoid cell line: GM19172 (Battle et al. 2015)   Schema 
     GM19190  Riboseq coverage of lymphoblastoid cell line: GM19190 (Battle et al. 2015)   Schema 
     GM19192  Riboseq coverage of lymphoblastoid cell line: GM19192 (Battle et al. 2015)   Schema 
     GM19193  Riboseq coverage of lymphoblastoid cell line: GM19193 (Battle et al. 2015)   Schema 
     GM19200  Riboseq coverage of lymphoblastoid cell line: GM19200 (Battle et al. 2015)   Schema 
     GM19201  Riboseq coverage of lymphoblastoid cell line: GM19201 (Battle et al. 2015)   Schema 
     GM19204  Riboseq coverage of lymphoblastoid cell line: GM19204 (Battle et al. 2015)   Schema 
     GM19207  Riboseq coverage of lymphoblastoid cell line: GM19207 (Battle et al. 2015)   Schema 
     GM19209  Riboseq coverage of lymphoblastoid cell line: GM19209 (Battle et al. 2015)   Schema 
     GM19210  Riboseq coverage of lymphoblastoid cell line: GM19210 (Battle et al. 2015)   Schema 
     GM19222  Riboseq coverage of lymphoblastoid cell line: GM19222 (Battle et al. 2015)   Schema 
     GM19223  Riboseq coverage of lymphoblastoid cell line: GM19223 (Battle et al. 2015)   Schema 
     GM19225  Riboseq coverage of lymphoblastoid cell line: GM19225 (Battle et al. 2015)   Schema 
     GM19238  Riboseq coverage of lymphoblastoid cell line: GM19238 (Battle et al. 2015)   Schema 
     GM19239  Riboseq coverage of lymphoblastoid cell line: GM19239 (Battle et al. 2015)   Schema 
     GM19257  Riboseq coverage of lymphoblastoid cell line: GM19257 (Battle et al. 2015)   Schema 
    

Description

The transcriptome wide level of translation was measured in lymphoblastoid cell lines derived from 72 HapMap Yoruba individuals using ribosome profiling.

Methods

Raw sequence data were obtained from NCBI FTP directory (SRP047476). Data from the following samples were processed:

GM18486 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18499 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18498 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18501 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18502 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18504 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18505 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18507 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18508 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18511 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18510 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18516 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18517 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18519 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18520 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18522 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18523 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18852 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18853 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18855 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18856 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18858 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18861 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18862 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18870 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18907 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18909 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18912 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18913 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18916 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19092 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19093 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19098 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19099 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19101 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19102 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19108 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19114 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19116 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19119 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19127 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19128 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19130 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19131 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19137 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19138 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19140 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19141 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19143 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19144 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19147 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19152 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19153 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19159 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19160 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19171 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19172 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19190 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19192 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19193 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19200 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19201 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19204 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19207 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19209 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19210 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19222 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19223 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19225 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19238 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19239 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19257 Ribosome profiling data from (Battle A, et al. 2015), gender: Female

Adaptor sequences had already been removed from reads. An alignment to ribosomal RNA was performed using Bowtie, and aligning reads were discarded. Finally, an alignment to the hg38 genome assembly was performed using Bowtie, and these tracks contains the uniquely mapping reads.

References

Battle A., Khan Z., Wang S.H., Mitrano A., Ford M.J., Pritchard J.K., Gilad Y., (2015). Impact of Regulatory Variation from RNA to Protein . Science. 10.1126/science.1260793