LCL: Battle 2015 Track Settings
 
Impact of Regulatory Variation from RNA to Protein (Battle et al. 2015)   (All Elongating Ribosomes (A-site) tracks)

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     GM18486  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18498  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18499  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18501  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18502  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18504  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18505  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18507  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18508  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18510  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18511  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18516  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18517  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18519  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18520  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18522  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18523  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18852  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18853  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18855  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18856  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18858  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18861  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18862  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18870  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18907  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18909  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18912  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18913  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM18916  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19092  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19093  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19098  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19099  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19101  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19102  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19108  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19114  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19116  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19119  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19127  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19128  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19130  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19131  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19137  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19138  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19140  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19141  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19143  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19144  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19147  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19152  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19153  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19159  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19160  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19171  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19172  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19190  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19192  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19193  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19200  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19201  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19204  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19207  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19209  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19210  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19222  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19223  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19225  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19238  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19239  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
     GM19257  Ribosome profiling of lymphoblastoid cell lines (Battle et al. 2015)   Schema 
    

Description

The transcriptome wide level of translation was measured in lymphoblastoid cell lines derived from 72 HapMap Yoruba individuals using ribosome profiling.

Methods

Raw sequence data were obtained from NCBI FTP directory (SRP047476). Data from the following samples were processed:

GM18486 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18499 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18498 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18501 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18502 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18504 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18505 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18507 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18508 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18511 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18510 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18516 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18517 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18519 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18520 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18522 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18523 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18852 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18853 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18855 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18856 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18858 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18861 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18862 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18870 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18907 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18909 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18912 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM18913 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM18916 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19092 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19093 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19098 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19099 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19101 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19102 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19108 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19114 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19116 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19119 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19127 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19128 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19130 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19131 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19137 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19138 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19140 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19141 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19143 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19144 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19147 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19152 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19153 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19159 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19160 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19171 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19172 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19190 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19192 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19193 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19200 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19201 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19204 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19207 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19209 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19210 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19222 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19223 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19225 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19238 Ribosome profiling data from (Battle A, et al. 2015), gender: Female
GM19239 Ribosome profiling data from (Battle A, et al. 2015), gender: Male
GM19257 Ribosome profiling data from (Battle A, et al. 2015), gender: Female

Adaptor sequences had already been removed from reads. An alignment to ribosomal RNA was performed using Bowtie, and aligning reads were discarded. Finally, an alignment to the hg38 genome assembly was performed using Bowtie, and these tracks contains the uniquely mapping reads that align to the A-site (using an offset of 15nt).

References

Battle A., Khan Z., Wang S.H., Mitrano A., Ford M.J., Pritchard J.K., Gilad Y., (2015). Impact of Regulatory Variation from RNA to Protein . Science. 10.1126/science.1260793