LCL: Battle 2015 Track Settings
 
Impact of regulatory variation from RNA to protein (Battle et al. 2015)   (All mRNA-seq Reads tracks)

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     NA18486  mRNA Coverage from Homo Sapiens cell line: NA18486 (Used By Battle et al. 2015)   Schema 
     NA18498  mRNA Coverage from Homo Sapiens cell line: NA18498 (Used By Battle et al. 2015)   Schema 
     NA18499  mRNA Coverage from Homo Sapiens cell line: NA18499 (Used By Battle et al. 2015)   Schema 
     NA18501  mRNA Coverage from Homo Sapiens cell line: NA18501 (Used By Battle et al. 2015)   Schema 
     NA18502  mRNA Coverage from Homo Sapiens cell line: NA18502 (Used By Battle et al. 2015)   Schema 
     NA18504  mRNA Coverage from Homo Sapiens cell line: NA18504 (Used By Battle et al. 2015)   Schema 
     NA18507  mRNA Coverage from Homo Sapiens cell line: NA18507 (Used By Battle et al. 2015)   Schema 
     NA18508  mRNA Coverage from Homo Sapiens cell line: NA18508 (Used By Battle et al. 2015)   Schema 
     NA18510  mRNA Coverage from Homo Sapiens cell line: NA18510 (Used By Battle et al. 2015)   Schema 
     NA18511  mRNA Coverage from Homo Sapiens cell line: NA18511 (Used By Battle et al. 2015)   Schema 
     NA18516  mRNA Coverage from Homo Sapiens cell line: NA18516 (Used By Battle et al. 2015)   Schema 
     NA18517  mRNA Coverage from Homo Sapiens cell line: NA18517 (Used By Battle et al. 2015)   Schema 
     NA18519  mRNA Coverage from Homo Sapiens cell line: NA18519 (Used By Battle et al. 2015)   Schema 
     NA18520  mRNA Coverage from Homo Sapiens cell line: NA18520 (Used By Battle et al. 2015)   Schema 
     NA18522  mRNA Coverage from Homo Sapiens cell line: NA18522 (Used By Battle et al. 2015)   Schema 
     NA18523  mRNA Coverage from Homo Sapiens cell line: NA18523 (Used By Battle et al. 2015)   Schema 
     NA18852  mRNA Coverage from Homo Sapiens cell line: NA18852 (Used By Battle et al. 2015)   Schema 
     NA18853  mRNA Coverage from Homo Sapiens cell line: NA18853 (Used By Battle et al. 2015)   Schema 
     NA18855  mRNA Coverage from Homo Sapiens cell line: NA18855 (Used By Battle et al. 2015)   Schema 
     NA18856  mRNA Coverage from Homo Sapiens cell line: NA18856 (Used By Battle et al. 2015)   Schema 
     NA18858  mRNA Coverage from Homo Sapiens cell line: NA18858 (Used By Battle et al. 2015)   Schema 
     NA18861  mRNA Coverage from Homo Sapiens cell line: NA18861 (Used By Battle et al. 2015)   Schema 
     NA18862  mRNA Coverage from Homo Sapiens cell line: NA18862 (Used By Battle et al. 2015)   Schema 
     NA18870  mRNA Coverage from Homo Sapiens cell line: NA18870 (Used By Battle et al. 2015)   Schema 
     NA18871  mRNA Coverage from Homo Sapiens cell line: NA18871 (Used By Battle et al. 2015)   Schema 
     NA18909  mRNA Coverage from Homo Sapiens cell line: NA18909 (Used By Battle et al. 2015)   Schema 
     NA18912  mRNA Coverage from Homo Sapiens cell line: NA18912 (Used By Battle et al. 2015)   Schema 
     NA18913  mRNA Coverage from Homo Sapiens cell line: NA18913 (Used By Battle et al. 2015)   Schema 
     NA18916  mRNA Coverage from Homo Sapiens cell line: NA18916 (Used By Battle et al. 2015)   Schema 
     NA19093  mRNA Coverage from Homo Sapiens cell line: NA19093 (Used By Battle et al. 2015)   Schema 
     NA19098  mRNA Coverage from Homo Sapiens cell line: NA19098 (Used By Battle et al. 2015)   Schema 
     NA19099  mRNA Coverage from Homo Sapiens cell line: NA19099 (Used By Battle et al. 2015)   Schema 
     NA19101  mRNA Coverage from Homo Sapiens cell line: NA19101 (Used By Battle et al. 2015)   Schema 
     NA19102  mRNA Coverage from Homo Sapiens cell line: NA19102 (Used By Battle et al. 2015)   Schema 
     NA19108  mRNA Coverage from Homo Sapiens cell line: NA19108 (Used By Battle et al. 2015)   Schema 
     NA19114  mRNA Coverage from Homo Sapiens cell line: NA19114 (Used By Battle et al. 2015)   Schema 
     NA19116  mRNA Coverage from Homo Sapiens cell line: NA19116 (Used By Battle et al. 2015)   Schema 
     NA19119  mRNA Coverage from Homo Sapiens cell line: NA19119 (Used By Battle et al. 2015)   Schema 
     NA19127  mRNA Coverage from Homo Sapiens cell line: NA19127 (Used By Battle et al. 2015)   Schema 
     NA19128  mRNA Coverage from Homo Sapiens cell line: NA19128 (Used By Battle et al. 2015)   Schema 
     NA19130  mRNA Coverage from Homo Sapiens cell line: NA19130 (Used By Battle et al. 2015)   Schema 
     NA19131  mRNA Coverage from Homo Sapiens cell line: NA19131 (Used By Battle et al. 2015)   Schema 
     NA19137  mRNA Coverage from Homo Sapiens cell line: NA19137 (Used By Battle et al. 2015)   Schema 
     NA19138  mRNA Coverage from Homo Sapiens cell line: NA19138 (Used By Battle et al. 2015)   Schema 
     NA19140  mRNA Coverage from Homo Sapiens cell line: NA19140 (Used By Battle et al. 2015)   Schema 
     NA19143  mRNA Coverage from Homo Sapiens cell line: NA19143 (Used By Battle et al. 2015)   Schema 
     NA19144  mRNA Coverage from Homo Sapiens cell line: NA19144 (Used By Battle et al. 2015)   Schema 
     NA19147  mRNA Coverage from Homo Sapiens cell line: NA19147 (Used By Battle et al. 2015)   Schema 
     NA19152  mRNA Coverage from Homo Sapiens cell line: NA19152 (Used By Battle et al. 2015)   Schema 
     NA19153  mRNA Coverage from Homo Sapiens cell line: NA19153 (Used By Battle et al. 2015)   Schema 
     NA19159  mRNA Coverage from Homo Sapiens cell line: NA19159 (Used By Battle et al. 2015)   Schema 
     NA19160  mRNA Coverage from Homo Sapiens cell line: NA19160 (Used By Battle et al. 2015)   Schema 
     NA19171  mRNA Coverage from Homo Sapiens cell line: NA19171 (Used By Battle et al. 2015)   Schema 
     NA19172  mRNA Coverage from Homo Sapiens cell line: NA19172 (Used By Battle et al. 2015)   Schema 
     NA19190  mRNA Coverage from Homo Sapiens cell line: NA19190 (Used By Battle et al. 2015)   Schema 
     NA19192  mRNA Coverage from Homo Sapiens cell line: NA19192 (Used By Battle et al. 2015)   Schema 
     NA19193  mRNA Coverage from Homo Sapiens cell line: NA19193 (Used By Battle et al. 2015)   Schema 
     NA19200  mRNA Coverage from Homo Sapiens cell line: NA19200 (Used By Battle et al. 2015)   Schema 
     NA19201  mRNA Coverage from Homo Sapiens cell line: NA19201 (Used By Battle et al. 2015)   Schema 
     NA19203  mRNA Coverage from Homo Sapiens cell line: NA19203 (Used By Battle et al. 2015)   Schema 
     NA19204  mRNA Coverage from Homo Sapiens cell line: NA19204 (Used By Battle et al. 2015)   Schema 
     NA19209  mRNA Coverage from Homo Sapiens cell line: NA19209 (Used By Battle et al. 2015)   Schema 
     NA19210  mRNA Coverage from Homo Sapiens cell line: NA19210 (Used By Battle et al. 2015)   Schema 
     NA19222  mRNA Coverage from Homo Sapiens cell line: NA19222 (Used By Battle et al. 2015)   Schema 
     NA19225  mRNA Coverage from Homo Sapiens cell line: NA19225 (Used By Battle et al. 2015)   Schema 
     NA19238  mRNA Coverage from Homo Sapiens cell line: NA19238 (Used By Battle et al. 2015)   Schema 
     NA19239  mRNA Coverage from Homo Sapiens cell line: NA19239 (Used By Battle et al. 2015)   Schema 
     NA19257  mRNA Coverage from Homo Sapiens cell line: NA19257 (Used By Battle et al. 2015)   Schema 
    

Description

RNA-Seq in 69 lymphoblastoid cell lines from multiple Yoruban HapMap individuals in at least two replicate lanes per individual.This data was produced in 2010 (Pickrell et al.) and the cell lines correspond to those used in the Battle et al. 2015 study.

Methods

Raw sequence data were obtained from NCBI FTP directory(SRP001540). Data from the following samples were processed:

All Ribosome profiling data from all cell lines (Used By Battle et al. 2015)
NA19160 Ribosome profiling data from Homo Sapiens cell line: NA19160 (Used By Battle et al. 2015)
NA18912 Ribosome profiling data from Homo Sapiens cell line: NA18912 (Used By Battle et al. 2015)
NA18522 Ribosome profiling data from Homo Sapiens cell line: NA18522 (Used By Battle et al. 2015)
NA19238 Ribosome profiling data from Homo Sapiens cell line: NA19238 (Used By Battle et al. 2015)
NA18858 Ribosome profiling data from Homo Sapiens cell line: NA18858 (Used By Battle et al. 2015)
NA18519 Ribosome profiling data from Homo Sapiens cell line: NA18519 (Used By Battle et al. 2015)
NA18520 Ribosome profiling data from Homo Sapiens cell line: NA18520 (Used By Battle et al. 2015)
NA19171 Ribosome profiling data from Homo Sapiens cell line: NA19171 (Used By Battle et al. 2015)
NA18498 Ribosome profiling data from Homo Sapiens cell line: NA18498 (Used By Battle et al. 2015)
NA18517 Ribosome profiling data from Homo Sapiens cell line: NA18517 (Used By Battle et al. 2015)
NA19172 Ribosome profiling data from Homo Sapiens cell line: NA19172 (Used By Battle et al. 2015)
NA19203 Ribosome profiling data from Homo Sapiens cell line: NA19203 (Used By Battle et al. 2015)
NA18913 Ribosome profiling data from Homo Sapiens cell line: NA18913 (Used By Battle et al. 2015)
NA18511 Ribosome profiling data from Homo Sapiens cell line: NA18511 (Used By Battle et al. 2015)
NA18871 Ribosome profiling data from Homo Sapiens cell line: NA18871 (Used By Battle et al. 2015)
NA19119 Ribosome profiling data from Homo Sapiens cell line: NA19119 (Used By Battle et al. 2015)
NA19144 Ribosome profiling data from Homo Sapiens cell line: NA19144 (Used By Battle et al. 2015)
NA19200 Ribosome profiling data from Homo Sapiens cell line: NA19200 (Used By Battle et al. 2015)
NA19225 Ribosome profiling data from Homo Sapiens cell line: NA19225 (Used By Battle et al. 2015)
NA19098 Ribosome profiling data from Homo Sapiens cell line: NA19098 (Used By Battle et al. 2015)
NA19128 Ribosome profiling data from Homo Sapiens cell line: NA19128 (Used By Battle et al. 2015)
NA18486 Ribosome profiling data from Homo Sapiens cell line: NA18486 (Used By Battle et al. 2015)
NA18504 Ribosome profiling data from Homo Sapiens cell line: NA18504 (Used By Battle et al. 2015)
NA19102 Ribosome profiling data from Homo Sapiens cell line: NA19102 (Used By Battle et al. 2015)
NA18870 Ribosome profiling data from Homo Sapiens cell line: NA18870 (Used By Battle et al. 2015)
NA19130 Ribosome profiling data from Homo Sapiens cell line: NA19130 (Used By Battle et al. 2015)
NA19114 Ribosome profiling data from Homo Sapiens cell line: NA19114 (Used By Battle et al. 2015)
NA19190 Ribosome profiling data from Homo Sapiens cell line: NA19190 (Used By Battle et al. 2015)
NA19137 Ribosome profiling data from Homo Sapiens cell line: NA19137 (Used By Battle et al. 2015)
NA19210 Ribosome profiling data from Homo Sapiens cell line: NA19210 (Used By Battle et al. 2015)
NA19143 Ribosome profiling data from Homo Sapiens cell line: NA19143 (Used By Battle et al. 2015)
NA19192 Ribosome profiling data from Homo Sapiens cell line: NA19192 (Used By Battle et al. 2015)
NA19239 Ribosome profiling data from Homo Sapiens cell line: NA19239 (Used By Battle et al. 2015)
NA18501 Ribosome profiling data from Homo Sapiens cell line: NA18501 (Used By Battle et al. 2015)
NA19153 Ribosome profiling data from Homo Sapiens cell line: NA19153 (Used By Battle et al. 2015)
NA19152 Ribosome profiling data from Homo Sapiens cell line: NA19152 (Used By Battle et al. 2015)
NA18508 Ribosome profiling data from Homo Sapiens cell line: NA18508 (Used By Battle et al. 2015)
NA19257 Ribosome profiling data from Homo Sapiens cell line: NA19257 (Used By Battle et al. 2015)
NA19159 Ribosome profiling data from Homo Sapiens cell line: NA19159 (Used By Battle et al. 2015)
NA19201 Ribosome profiling data from Homo Sapiens cell line: NA19201 (Used By Battle et al. 2015)
NA19204 Ribosome profiling data from Homo Sapiens cell line: NA19204 (Used By Battle et al. 2015)
NA18853 Ribosome profiling data from Homo Sapiens cell line: NA18853 (Used By Battle et al. 2015)
NA19099 Ribosome profiling data from Homo Sapiens cell line: NA19099 (Used By Battle et al. 2015)
NA18862 Ribosome profiling data from Homo Sapiens cell line: NA18862 (Used By Battle et al. 2015)
NA19101 Ribosome profiling data from Homo Sapiens cell line: NA19101 (Used By Battle et al. 2015)
NA19209 Ribosome profiling data from Homo Sapiens cell line: NA19209 (Used By Battle et al. 2015)
NA18499 Ribosome profiling data from Homo Sapiens cell line: NA18499 (Used By Battle et al. 2015)
NA18523 Ribosome profiling data from Homo Sapiens cell line: NA18523 (Used By Battle et al. 2015)
NA19093 Ribosome profiling data from Homo Sapiens cell line: NA19093 (Used By Battle et al. 2015)
NA18855 Ribosome profiling data from Homo Sapiens cell line: NA18855 (Used By Battle et al. 2015)
NA18507 Ribosome profiling data from Homo Sapiens cell line: NA18507 (Used By Battle et al. 2015)
NA18856 Ribosome profiling data from Homo Sapiens cell line: NA18856 (Used By Battle et al. 2015)
NA19127 Ribosome profiling data from Homo Sapiens cell line: NA19127 (Used By Battle et al. 2015)
NA19131 Ribosome profiling data from Homo Sapiens cell line: NA19131 (Used By Battle et al. 2015)
NA19147 Ribosome profiling data from Homo Sapiens cell line: NA19147 (Used By Battle et al. 2015)
NA19108 Ribosome profiling data from Homo Sapiens cell line: NA19108 (Used By Battle et al. 2015)
NA18861 Ribosome profiling data from Homo Sapiens cell line: NA18861 (Used By Battle et al. 2015)
NA18909 Ribosome profiling data from Homo Sapiens cell line: NA18909 (Used By Battle et al. 2015)
NA18516 Ribosome profiling data from Homo Sapiens cell line: NA18516 (Used By Battle et al. 2015)
NA19140 Ribosome profiling data from Homo Sapiens cell line: NA19140 (Used By Battle et al. 2015)
NA19193 Ribosome profiling data from Homo Sapiens cell line: NA19193 (Used By Battle et al. 2015)
NA18916 Ribosome profiling data from Homo Sapiens cell line: NA18916 (Used By Battle et al. 2015)
NA18502 Ribosome profiling data from Homo Sapiens cell line: NA18502 (Used By Battle et al. 2015)
NA19222 Ribosome profiling data from Homo Sapiens cell line: NA19222 (Used By Battle et al. 2015)
NA19116 Ribosome profiling data from Homo Sapiens cell line: NA19116 (Used By Battle et al. 2015)
NA19138 Ribosome profiling data from Homo Sapiens cell line: NA19138 (Used By Battle et al. 2015)
NA18510 Ribosome profiling data from Homo Sapiens cell line: NA18510 (Used By Battle et al. 2015)
NA18852 Ribosome profiling data from Homo Sapiens cell line: NA18852 (Used By Battle et al. 2015)

Adaptor sequences had already been removed from reads.An alignment to ribosomal RNA was performed using Bowtie,and aligning reads were discarded. An alignment to the hg38 genome assembly was performed usingBowtie, and these tracks contains the uniquely mapping reads.

References

Battle A., Khan Z., Wang S.H., Mitrano A., Ford M.J., Pritchard J.K., Gilad Y., (2015). Impact of Regulatory Variation from RNA to Protein . Science. 10.1126/science.1260793