GWIPS-viz Genome Browser on Mouse Dec. 2011 (GRCm38/mm10) Assembly
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chr1:75,435,936-75,443,248 7,313 bp.
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-   Initiating Ribosomes (P-site)
Global aggregate
Dendritic: Fields 2015
Epidermis: Sendoel17
MEF & Liver: Gao 2014
MEF: Lee 2012
myoblasts & myotubes: deKlerk 2015
TISs initiation probabilities
-   Elongating Ribosomes (A-site)
Global aggregate
3T3:Eichhorn 2014
Adipose: Reid17
brain: Gonzalez 2014
Brain:Cho 2015
Brain:Hornstein 2016
Dendritic: Fields 2015
Epidermis: Sendoel17
ESCs: Simsek17
Kidney: CasteloSzekely17
Liver: AlvarezDominguez17
Liver: FradejasVillar16
liver: Howard 2013
Liver: Janich 2015
Liver:Atger 2015
Liver:Gerashchenko 2016
MEF & Liver: Gao 2014
MEF: Lee 2012
MEF: Reid 2016
MEF: Thoreen 2012
Melanoma: Rapino18
MES & EB: Ingolia 2011
MES: Hurt 2013
MES: Ingolia 2014
MES: Laguesse 2015
MES: Neri17
MES: Reid 2014
MES: You 2015
mESC: Atlasi20
mESC: Freimer18
myoblasts & myotubes: deKlerk 2015
neutrophils: Guo 2010
NSUN2: Blanco 2016
Testes :Castaneda 2014
-   Elongating Ribosomes (Footprints)
Global aggregate
3T3:Eichhorn 2014
Adipose: Reid17
Brain:Cho 2015
Brain:Hornstein 2016
Dendritic: Fields 2015
Epidermis: Sendoel17
ESCs: Simsek17
Kidney: CasteloSzekely17
Liver: AlvarezDominguez17
Liver: FradejasVillar16
liver: Howard 2013
Liver: Janich 2015
Liver:Atger 2015
Liver:Gerashchenko 2016
MEF & Liver: Gao 2014
MEF: Lee 2012
MEF: Reid 2016
MEF: Thoreen 2012
Melanoma: Rapino18
MES & EB: Ingolia 2011
MES: Hurt 2013
MES: Ingolia 2014
MES: Laguesse 2015
MES: Neri17
MES: Reid 2014
MES: You 2015
mESC: Atlasi20
mESC: Freimer18
neutrophils: Guo 2010
NSUN2: Blanco 2016
Testes :Castaneda 2014
-   mRNA-seq Reads
Global aggregate
3T3:Eichhorn 2014
Adipose: Reid17
brain: Gonzalez 2014
Brain:Cho 2015
Brain:Hornstein 2016
Epidermis: Sendoel17
ESCs: Simsek17
Kidney: CasteloSzekely17
Liver :Janich 2015
Liver: AlvarezDominguez17
Liver: FradejasVillar16
liver: Howard 2013
Liver:Atger 2015
MEF & Liver: Gao 2014
MEF: Reid 2016
MEF: Thoreen 2012
Melanoma: Rapino18
MES & EB: Ingolia 2011
MES: Hurt 2013
MES: Laguesse 2015
MES: Reid 2014
MES: You 2015
mesc: Atlasi20
mESC: Freimer18
neutrophils: Guo 2010
NSUN2: Blanco 2016
Testes :Castaneda 2014
-   Ribosome Profiles - Elongating Ribosomes
Base Position
Short Match
-   Annotation Tracks and External Data
NCBI RefSeq
All GENCODE VM18
RefSeq Genes
Ensembl Genes
Spliced ESTs
Mouse ESTs
RepeatMasker